Multiple Local Alignment (Local Alignment)
Revision as of 10:29, 15 February 2023 by Admin (talk | contribs) (Created page with "{{DISPLAYTITLE:Multiple Local Alignment (Local Alignment)}} == Description == Given $k$ input strings and a scoring function on pairs of letters, one is asked to find the substrings of the $k$ input strings that are most similar under the scoring function. == Related Problems == Generalizations: Local Alignment == Parameters == <pre>k: number of input strings n: length of input strings?</pre> == Table of Algorithms == Currently no algorithms in our databas...")
Description
Given $k$ input strings and a scoring function on pairs of letters, one is asked to find the substrings of the $k$ input strings that are most similar under the scoring function.
Related Problems
Generalizations: Local Alignment
Parameters
k: number of input strings n: length of input strings?
Table of Algorithms
Currently no algorithms in our database for the given problem.
Reductions FROM Problem
| Problem | Implication | Year | Citation | Reduction |
|---|---|---|---|---|
| CNF-SAT | if: to-time: $N^{k-\epsilon}$ for some $\epsilon > {0}$ on $k$ binary strings of length $n$ with $k$-wise scoring then: from-time: ${2}^{(n-\epsilon')}$ for some $\epsilon' > {0}$ |
2014 | https://link-springer-com.ezproxy.canberra.edu.au/chapter/10.1007/978-3-662-43948-7_4 | link |