Kingsford (Motif Search Motif Search)
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Time Complexity
$O(mn)$
Space Complexity
$O(m^{2}n^{2})$ words
(Creates an ILP with $O(m^2n^2)$ variables and $O(n^2m)$ constraints, each involving $O(m)$ variables)
Description
ILP formulation
Approximate?
Exact
Randomized?
No, deterministic
Model of Computation
Word RAM
Year
2006
Reference
https://link-springer-com.ezproxy.canberra.edu.au/chapter/10.1007/11780441_22